rdkit.Chem.DSViewer.MolViewer

Class MolViewer

object --+ | MolViewer

Instance Methods

[hide private]

__init__(self, force=0, title='Untitled', **kwargs)
x.__init__(...) initializes x; see help(type(x)) for signature

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DeleteAll(self)

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DeleteAllExcept(self, excludes)

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ShowMol(self, mol, name='molecule', showOnly=True, highlightFeatures=[], molB="", confId=-1, zoom=True)

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LoadFile(self, filename, name, showOnly=False)

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GetSelectedAtoms(self, whichSelection='')

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HighlightAtoms(self, indices, where, extraHighlight=False)

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SelectAtoms(self, itemId, atomIndices, selName='selection')

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SetDisplayUpdate(self, val)

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GetAtomCoords(self, sels)

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AddPharmacophore(self, locs, colors, label, sphereRad=0.5)

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SetDisplayStyle(self, obj, style='')

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HideAll(self)

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HideObject(self, objName)

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DisplayObject(self, objName)

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Zoom(self, objName)

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SelectProteinNeighborhood(self, aroundObj, inObj, distance=5.0, name='neighborhood', showSurface=False)
FIX: the surface display stuff here is all screwed up due to differences between the way PyMol and DSViewer handle surfaces.

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Redraw(self)

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Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties

[hide private]

Inherited from object: __class__

init(self, force=0, title='Untitled', **kwargs)
(Constructor)

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x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__: (inherited documentation)

SelectProteinNeighborhood(self, aroundObj, inObj, distance=5.0, name='neighborhood', showSurface=False)

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FIX: the surface display stuff here is all screwed up due to
differences between the way PyMol and DSViewer handle surfaces.
In PyMol they are essentially a display mode for the protein, so
they don't need to be managed separately.
In DSViewer, on the other hand, the surface is attached to the
protein, but it needs to be hidden or shown on its own.  I haven't
figured out how to do that yet.

Class MolViewer

__init__(self, force=0, title='Untitled', **kwargs) (Constructor)

SelectProteinNeighborhood(self, aroundObj, inObj, distance=5.0, name='neighborhood', showSurface=False)

init(self, force=0, title='Untitled', **kwargs)
(Constructor)